sarje :: abhinav () {
:: publications
journal articles

Slim Chourou Abhinav Sarje Xiaoye Li Elaine Chan Alexander Hexemer "HipGISAXS: A High-Performance Computing Code for Simulating Grazing-Incidence X-Ray Scattering Data" Journal of Applied Crystallography vol. 46, no. 6, pp. 1781-1795 2013

Abhinav Sarje Srinivas Aluru "All-pairs Computations on Many-Core Graphics Processors" Parallel Computing vol. 39, no. 2, pp. 79-93 2013

Abhinav Sarje Jaroslaw Zola Srinivas Aluru "Accelerating Pairwise Computations on Cell Processors" IEEE Transactions on Parallel and Distributed Systems (TPDS) vol. 22, no. 1, pp. 69-77 2011 joint first authors

Jaroslaw Zola Maneesha Aluru Abhinav Sarje Srinivas Aluru "Parallel Information Theory Based Construction of Genome-wide Gene Regulatory Networks" IEEE Transactions on Parallel and Distributed Systems (TPDS) vol. 21, no. 12, pp. 1721-1733 2010

Abhinav Sarje Srinivas Aluru "Parallel Genomic Alignments on the Cell Broadband Engine" IEEE Transactions on Parallel and Distributed Systems (TPDS) vol. 20, no. 11, pp. 1600-1610 2009

refereed conference publications

Abhinav Sarje Sukhyun Song Douglas Jacobsen Kevin Huck Jeffrey Hollingsworth Allen Malony Samuel Williams Leonid Oliker "Parallel Performance Optimiztions on Unstructured Mesh-Based Simulations" Proceedia Conputer Science, International Conference on Computational Science (ICCS'15) June 2015

Abhinav Sarje Xiaoye Li Alexander Hexemer "High-Performance Inverse Modeling with Reverse Monte Carlo Simulations" Proceedings of the International Conference on Parallel Processing (ICPP'14) September 2014

Abhinav Sarje Xiaoye Li Alexander Hexemer "Tuning HipGISAXS on Multi and Many Core Supercomputers" Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS) at Supercomputing (SC'13) November 2013

Abhinav Sarje Xiaoye Li Slim Chourou Elaine Chan Alexander Hexemer "Massively Parallel X-ray Scattering Simulations" Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis (Supercomputing SC'12) pp. 46:1-46:11 2012

Abhinav Sarje Srinivas Aluru "A MapReduce Style Framework for Computations on Trees" Proceedings of the 39th International Conference on Parallel Processing (ICPP'10) pp. 343-352 2010

Abhinav Sarje Jaroslaw Zola Srinivas Aluru "Constructing Gene Regulatory Networks on Clusters of Cell Processors" Proceedings of the 38th International Conference on Parallel Processing (ICPP'09) pp. 108-115 2009 joint first authors

Abhinav Sarje Srinivas Aluru "Parallel Biological Sequence Alignments on the Cell Broadband Engine" Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium (IPDPS'08) pp. 1-11 2008

Abhinav Sarje Amit Chawre Shivashankar Nair "Reinforcement Learning of Player Agents in RoboCup Soccer Simulation" Proceedings of the 4th IEEE International Conference on Hybrid Intelligent Systems (HIS'04) pp. 480-481 2004

book chapters

Abhinav Sarje Jaroslaw Zola Srinivas Aluru "Pairwise Computations on the Cell Processor with Applications in Computational Biology" in Scientific Computing with Multicore and Accelerators, Eds. J. Dongarra, D. A. Bader and J. Kurzak, Chapman & Hall/CRC Computational Science Series December 2010

Abhinav Sarje Srinivas Aluru "Parallel Algorithms for Alignments on the Cell B.E." in Bioinformatics: High Performance Parallel Computer Architectures, Ed. B. Schmidt, Taylor & Francis Group/CRC Embedded Multi-Core Systems Series July 2010

doctoral thesis

Abhinav Sarje "Applications on Emerging Paradigms in Parallel Computing" Iowa State University, Ames, IA 2010

reports and posters

Abhinav Sarje Xiaoye S Li Slim Chourou Alexander Hexemer "Petascale X-Ray Scattering Simulations With GPUs" in GPU Technology Conference (GTC'14), (best poster finalist) 2014

Abhinav Sarje Xiaoye S Li Alexander Hexemer "Inverse Modeling of X-Ray Scattering Data With Reverse Monte Carlo Simulations" in GPU Technology Conference (GTC'14) 2014

Abhinav Sarje Samuel Williams David Bailey "MPQC: Performance analysis and optimization" Technical Report, Lawrence Berkeley National Laboratory, LBNL-6076E 2013

Abhinav Sarje Jack Pien Xiaoye Li Elaine Chan Slim Chourou Alexander Hexemer Arthur Scholz Edward Kramer "Large-scale Nanostructure Simulations from X-ray Scattering Data On Graphics Processor Clusters" Technical Report, Lawrence Berkeley National Laboratory, LBNL-5351E 2012

Abhinav Sarje Xiaoye Li Slim Chourou Elaine Chan Alexander Hexemer "GPU Clusters for Large-Scale Analysis of X-ray Scattering Data" in GPU Technology Conference (GTC'12), also invited poster at Accelerating Computational Science Symposium (ACSS'12) 2012

Abhinav Sarje "Parallel Techniques for Efficient Pairwise Computations on Emerging Architectures" in PhD Forum at the 24th International Parallel and Distributed Processing Symposium (IPDPS), IEEE TCPP best poster award 2010

Abhinav Sarje Srinivas Aluru "A Mapreduce Style Framework for Trees" Technical Report, Department of Electrical and Computer Engineering, Iowa State University 2009